Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT2G45023 AT2G45023 |
Chr2 | 18570156 | 18572173 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT2G45023.1 AT2G45023.1 |
Low | No | 1153 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -27.051 AMFE: -0.647 GC content %: 41.803 | |
Athaliana_AT2G45023.2 AT2G45023.2 |
Low | No | 782 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -24.962 AMFE: -0.634 GC content %: 39.386 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT2G45023.1 | SwissProt | 2015-06-01 | Q9LF04 | 1.0e-6 |
Athaliana_AT2G45023.2 | SwissProt | 2015-06-01 | Q9LF04 | 5.0e-7 |