Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT3G15395 AT3G15395 |
Chr3 | 5200639 | 5201514 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT3G15395.1 AT3G15395.1 PAC:19662849 |
High | No | 380 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -24.500 AMFE: -0.621 GC content %: 39.474 | |
Athaliana_AT3G15395.2 AT3G15395.2 PAC:19662850 |
High | No | 655 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -22.855 AMFE: -0.640 GC content %: 35.725 | |
Athaliana_AT3G15395.3 AT3G15395.3 PAC:19662851 |
High | No | 580 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -22.034 AMFE: -0.600 GC content %: 36.724 | |
Athaliana_AT3G15395.4 AT3G15395.4 PAC:19662852 |
High | No | 444 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -24.212 AMFE: -0.632 GC content %: 38.288 |