Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT3G26819 AT3G26819 |
Chr3 | 9878540 | 9878754 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT3G26819.1 AT3G26819.1 |
Low | Yes | 215 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -35.442 AMFE: -0.918 GC content %: 38.604 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT3G26819.1 | miRBase | 20.0 | sbi-miR169e | 2.0e-4 |
Athaliana_AT3G26819.1 | miRBase | 20.0 | bna-miR169j | 1.0e-5 |
Athaliana_AT3G26819.1 | miRBase | 20.0 | vvi-miR169r | 0.023 |
Athaliana_AT3G26819.1 | miRBase | 20.0 | cme-miR169g | 0.023 |
Athaliana_AT3G26819.1 | miRBase | 20.0 | bna-miR169b | 5.0e-4 |
Athaliana_AT3G26819.1 | miRBase | 20.0 | mes-miR169a | 5.0e-4 |
Athaliana_AT3G26819.1 | miRBase | 20.0 | osa-miR169l | 1.0e-5 |
Athaliana_AT3G26819.1 | miRBase | 20.0 | ptc-miR169c | 5.0e-4 |
Athaliana_AT3G26819.1 | miRBase | 20.0 | lus-miR169l | 5.0e-4 |
Athaliana_AT3G26819.1 | miRBase | 20.0 | nta-miR169m | 5.0e-4 |
... further results