Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT3G28005 AT3G28005 |
Chr3 | 10406447 | 10407217 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT3G28005.1 AT3G28005.1 |
Low | Yes | 771 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -19.598 AMFE: -0.590 GC content %: 33.203 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT3G28005.1 | Rfam | 11.0 | MIR405 | 1.1e-6 |
Athaliana_AT3G28005.1 | RepBase (RepeatMasker) | 2014-01-31 | SIMPLEHAT2 | |
Athaliana_AT3G28005.1 | NONCODE | 3 | NONATHT001930 |