GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT3G42150 AT3G42150	Chr3	14309314	14311638	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT3G42150.1 AT3G42150.1 PAC:19658793	High	No	725		Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -22.234 AMFE: -0.543 GC content %: 40.966
Athaliana_AT3G42150.2 AT3G42150.2 PAC:19658794	High	No	470		Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -23.957 AMFE: -0.593 GC content %: 40.426
Athaliana_AT3G42150.3 AT3G42150.3 PAC:19658795	High	No	458		Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -23.690 AMFE: -0.577 GC content %: 41.048

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).