GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT3G47836 AT3G47836	Chr3	17650260	17651765	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT3G47836.1 AT3G47836.1 PAC:19659001	High	No	400		Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -22.250 AMFE: -0.549 GC content %: 40.500
Athaliana_AT3G47836.2 AT3G47836.2 PAC:19659002	High	No	397		Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -22.443 AMFE: -0.553 GC content %: 40.554

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).