GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT3G52070 AT3G52070	Chr3	19312718	19313466	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT3G52070.1 AT3G52070.1 PAC:19659152	High	No	507		Get ORF Coding potential... Type: noncoding Potential: -0.443 Folding energies... MFEI: -23.274 AMFE: -0.573 GC content %: 40.631
Athaliana_AT3G52070.2 AT3G52070.2 PAC:19659153	High	No	548		Get ORF Coding potential... Type: noncoding Potential: -0.460 Folding energies... MFEI: -24.964 AMFE: -0.561 GC content %: 44.526

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).