GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT3G57062 AT3G57062	Chr3	21121338	21122569	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT3G57062.1 AT3G57062.1 PAC:19663517	High	No	533		Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -24.803 AMFE: -0.618 GC content %: 40.150
Athaliana_AT3G57062.2 AT3G57062.2 PAC:19663518	High	No	552		Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -26.123 AMFE: -0.624 GC content %: 41.848

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).