GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT4G16695 AT4G16695	Chr4	9394183	9395517	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT4G16695.1 AT4G16695.1 PAC:19646376	High	No	510		Get ORF Coding potential... Type: noncoding Potential: -1.419 Folding energies... MFEI: -25.392 AMFE: -0.635 GC content %: 40.000
Athaliana_AT4G16695.2 AT4G16695.2 PAC:19646378	High	No	402		Get ORF Coding potential... Type: noncoding Potential: -1.403 Folding energies... MFEI: -26.567 AMFE: -0.636 GC content %: 41.791
Athaliana_AT4G16695.3 AT4G16695.3 PAC:19646377	High	No	581		Get ORF Coding potential... Type: noncoding Potential: -1.358 Folding energies... MFEI: -26.661 AMFE: -0.662 GC content %: 40.275

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).