Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT4G39930 AT4G39930 |
Chr4 | 18518343 | 18518983 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT4G39930.1 AT4G39930.1 PAC:19646798 |
Low | No | 641 | Get ORF Coding potential... Type: noncoding Potential: -0.555 Folding energies... MFEI: -23.651 AMFE: -0.579 GC content %: 40.874 | |
Athaliana_AT4G39930.2 AT4G39930.2 PAC:19646799 |
Low | No | 552 | Get ORF Coding potential... Type: noncoding Potential: -0.512 Folding energies... MFEI: -24.203 AMFE: -0.583 GC content %: 41.486 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT4G39930.1 | SwissProt | 2015-06-01 | Q9SF85 | 7.0e-9 |
Athaliana_AT4G39930.2 | SwissProt | 2015-06-01 | Q9SF85 | 4.0e-9 |