GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G04080 AT5G04080	Chr5	1104524	1105398	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G04080.1 AT5G04080.1 PAC:19667308	High	No	504		Get ORF Coding potential... Type: noncoding Potential: -0.624 Folding energies... MFEI: -25.595 AMFE: -0.665 GC content %: 38.492
Athaliana_AT5G04080.2 AT5G04080.2 PAC:19667309	High	No	673		Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -22.467 AMFE: -0.593 GC content %: 37.890
Athaliana_AT5G04080.3 AT5G04080.3 PAC:19667310	High	No	698		Get ORF Coding potential... Type: noncoding Potential: -0.680 Folding energies... MFEI: -22.636 AMFE: -0.603 GC content %: 37.536

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).