GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G04750 AT5G04750	Chr5	1372147	1373619	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G04750.1 AT5G04750.1 PAC:19668913	High	No	598		Get ORF Coding potential... Type: noncoding Potential: -0.808 Folding energies... MFEI: -23.896 AMFE: -0.576 GC content %: 41.472
Athaliana_AT5G04750.2 AT5G04750.2 PAC:19668914	High	No	546		Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -25.458 AMFE: -0.599 GC content %: 42.491

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).