GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G08185 AT5G08185	Chr5	2634101	2635438	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G08185.1 AT5G08185.1 PAC:19668068	High	No	600		Get ORF Coding potential... Type: noncoding Potential: -1.347 Folding energies... MFEI: -25.633 AMFE: -0.684 GC content %: 37.500
Athaliana_AT5G08185.2 AT5G08185.2 PAC:19668065	High	No	670		Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -26.746 AMFE: -0.700 GC content %: 38.209
Athaliana_AT5G08185.3 AT5G08185.3 PAC:19668067	High	No	580		Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -26.672 AMFE: -0.694 GC content %: 38.448
Athaliana_AT5G08185.4 AT5G08185.4 PAC:19668066	High	No	659		Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -26.525 AMFE: -0.696 GC content %: 38.088

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).