GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G10278 AT5G10278	Chr5	3228241	3234210	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G10278.1 AT5G10278.1	High	No	991		Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -23.713 AMFE: -0.620 GC content %: 38.244
Athaliana_AT5G10278.2 AT5G10278.2	High	No	1934		Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -22.410 AMFE: -0.657 GC content %: 34.126

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).