GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G11630 AT5G11630	Chr5	3740460	3742139	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G11630.1 AT5G11630.1 PAC:19665430	High	No	653		Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -27.075 AMFE: -0.591 GC content %: 45.789
Athaliana_AT5G11630.2 AT5G11630.2 PAC:19665431	High	No	507		Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -25.838 AMFE: -0.587 GC content %: 43.984

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).