GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G15190 AT5G15190	Chr5	4932820	4933577	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G15190.1 AT5G15190.1 PAC:19670168	High	No	728		Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -25.701 AMFE: -0.671 GC content %: 38.324
Athaliana_AT5G15190.2 AT5G15190.2 PAC:19670169	High	No	634		Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -25.599 AMFE: -0.649 GC content %: 39.432

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).