GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G22280 AT5G22280	Chr5	7373995	7375719	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G22280.1 AT5G22280.1 PAC:19670249	High	No	780		Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -21.962 AMFE: -0.585 GC content %: 37.564
Athaliana_AT5G22280.2 AT5G22280.2 PAC:19670250	High	No	700		Get ORF Coding potential... Type: noncoding Potential: -0.574 Folding energies... MFEI: -22.029 AMFE: -0.589 GC content %: 37.429

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).