GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G22608 AT5G22608	Chr5	7513173	7514453	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G22608.1 AT5G22608.1 PAC:19668802	High	No	682		Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -22.566 AMFE: -0.585 GC content %: 38.563
Athaliana_AT5G22608.2 AT5G22608.2 PAC:19668801	High	No	706		Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -22.167 AMFE: -0.577 GC content %: 38.385
Athaliana_AT5G22608.3 AT5G22608.3 PAC:19668803	High	No	509		Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -22.515 AMFE: -0.591 GC content %: 38.114

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).