GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G25570 AT5G25570	Chr5	8901741	8903219	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G25570.1 AT5G25570.1 PAC:19668728	High	No	719		Get ORF Coding potential... Type: noncoding Potential: -0.368 Folding energies... MFEI: -23.143 AMFE: -0.596 GC content %: 38.804
Athaliana_AT5G25570.2 AT5G25570.2 PAC:19668729	High	No	614		Get ORF Coding potential... Type: noncoding Potential: -0.323 Folding energies... MFEI: -23.160 AMFE: -0.590 GC content %: 39.251

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).