Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT5G34749 AT5G34749 |
Chr5 | 12951062 | 12952393 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT5G34749.1 AT5G34749.1 |
Low | Yes | 1332 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -28.018 AMFE: -0.580 GC content %: 48.348 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT5G34749.1 | Rfam | 11.0 | MIR854 | 1.9e-7 |
Athaliana_AT5G34749.1 | RepBase (RepeatMasker) | 2014-01-31 | Athila_I-int |