GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G60400 AT5G60400	Chr5	24291140	24292162	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G60400.1 AT5G60400.1 PAC:19665957	High	No	499		Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -25.090 AMFE: -0.652 GC content %: 38.477
Athaliana_AT5G60400.2 AT5G60400.2 PAC:19665958	High	No	515		Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -22.194 AMFE: -0.586 GC content %: 37.864
Athaliana_AT5G60400.3 AT5G60400.3 PAC:19665956	High	No	699		Get ORF Coding potential... Type: noncoding Potential: -0.465 Folding energies... MFEI: -23.948 AMFE: -0.649 GC content %: 36.910

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).