Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Atrichopoda_evm_27.TU.AmTr_v1.0_scaffold00001.152 evm_27.TU.AmTr_v1.0_scaffold00001.152 |
AmTr_v1.0_scaffold00001 | 2553227 | 2553657 | Phytozome | v1.0 | Amborella_trichopoda | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Atrichopoda_evm_27.model.AmTr_v1.0_scaffold00001.152 evm_27.model.AmTr_v1.0_scaffold00001.152 PAC:31550961 |
Low | No | 315 | Get ORF Coding potential... Type: noncoding Potential: -0.587 Folding energies... MFEI: -24.032 AMFE: -0.498 GC content %: 48.254 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atrichopoda_evm_27.model.AmTr_v1.0_scaffold00001.152 | SwissProt | 2015-06-01 | Q9FKS4 | 3.0e-19 |