Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Atrichopoda_evm_27.TU.AmTr_v1.0_scaffold00001.224 evm_27.TU.AmTr_v1.0_scaffold00001.224 |
AmTr_v1.0_scaffold00001 | 4296389 | 4296812 | Phytozome | v1.0 | Amborella_trichopoda | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Atrichopoda_evm_27.model.AmTr_v1.0_scaffold00001.224 evm_27.model.AmTr_v1.0_scaffold00001.224 PAC:31551122 |
Low | No | 336 | Get ORF Coding potential... Type: noncoding Potential: -0.194 Folding energies... MFEI: -19.286 AMFE: -0.429 GC content %: 44.940 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atrichopoda_evm_27.model.AmTr_v1.0_scaffold00001.224 | SwissProt | 2015-06-01 | Q9SJ81 | 2.0e-16 |