GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Atrichopoda_evm_27.TU.AmTr_v1.0_scaffold00001.245 evm_27.TU.AmTr_v1.0_scaffold00001.245	AmTr_v1.0_scaffold00001	4987773	4988252	Phytozome	v1.0	Amborella_trichopoda	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Atrichopoda_evm_27.model.AmTr_v1.0_scaffold00001.245 evm_27.model.AmTr_v1.0_scaffold00001.245 PAC:31551080	High	No	480		Get ORF Coding potential... Type: noncoding Potential: -1.591 Folding energies... MFEI: -28.125 AMFE: -0.517 GC content %: 54.375

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).