Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Atrichopoda_evm_27.TU.AmTr_v1.0_scaffold00005.179 evm_27.TU.AmTr_v1.0_scaffold00005.179 |
AmTr_v1.0_scaffold00005 | 7161940 | 7162188 | Phytozome | v1.0 | Amborella_trichopoda | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Atrichopoda_evm_27.model.AmTr_v1.0_scaffold00005.179 evm_27.model.AmTr_v1.0_scaffold00005.179 PAC:31576012 |
Low | No | 249 | Get ORF Coding potential... Type: noncoding Potential: -0.377 Folding energies... MFEI: -25.783 AMFE: -0.502 GC content %: 51.406 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atrichopoda_evm_27.model.AmTr_v1.0_scaffold00005.179 | SwissProt | 2015-06-01 | P0C1U4 | 2.0e-24 |