Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Atrichopoda_evm_27.TU.AmTr_v1.0_scaffold00024.168 evm_27.TU.AmTr_v1.0_scaffold00024.168 |
AmTr_v1.0_scaffold00024 | 3538503 | 3538832 | Phytozome | v1.0 | Amborella_trichopoda | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Atrichopoda_evm_27.model.AmTr_v1.0_scaffold00024.168 evm_27.model.AmTr_v1.0_scaffold00024.168 PAC:31558460 |
Low | Yes | 330 | Get ORF Coding potential... Type: noncoding Potential: -1.591 Folding energies... MFEI: -39.727 AMFE: -0.809 GC content %: 49.091 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atrichopoda_evm_27.model.AmTr_v1.0_scaffold00024.168 | Rfam | 11.0 | mir-609 | 6.4e-6 |