Gene
Bdistachyon Bradi1g03954
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi1g03954 Bradi1g03954 |
Bd1 | 2674712 | 2676697 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi1g03954.1 Bradi1g03954.1 PAC:32793059 |
High | No | 1012 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -23.587 AMFE: -0.470 GC content %: 50.198 | |
| Bdistachyon_Bradi1g03954.2 Bradi1g03954.2 PAC:32793060 |
High | No | 947 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -24.150 AMFE: -0.479 GC content %: 50.370 | |
| Bdistachyon_Bradi1g03954.3 Bradi1g03954.3 PAC:32793061 |
High | No | 940 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -23.979 AMFE: -0.476 GC content %: 50.426 | |
| Bdistachyon_Bradi1g03954.4 Bradi1g03954.4 PAC:32793062 |
High | No | 1141 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -24.645 AMFE: -0.499 GC content %: 49.343 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
