GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g07195 Bradi1g07195	Bd1	5028033	5029456	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g07195.2 Bradi1g07195.2 PAC:32805645	High	No	967		Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -33.516 AMFE: -0.648 GC content %: 51.706
Bdistachyon_Bradi1g07195.3 Bradi1g07195.3 PAC:32805646	High	No	944		Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -33.845 AMFE: -0.653 GC content %: 51.801
Bdistachyon_Bradi1g07195.4 Bradi1g07195.4 PAC:32805647	High	No	732		Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -34.863 AMFE: -0.646 GC content %: 53.962

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).