Gene
Bdistachyon Bradi1g12196
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi1g12196 Bradi1g12196 |
Bd1 | 9087911 | 9098668 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi1g12196.1 Bradi1g12196.1 PAC:32794974 |
Low | Yes | 1916 | Get ORF Coding potential... Type: noncoding Potential: -1.349 Folding energies... MFEI: -34.122 AMFE: -0.755 GC content %: 45.198 | |
| Bdistachyon_Bradi1g12196.2 Bradi1g12196.2 PAC:32794976 |
Low | Yes | 1348 | Get ORF Coding potential... Type: noncoding Potential: -1.340 Folding energies... MFEI: -34.434 AMFE: -0.703 GC content %: 48.961 | |
| Bdistachyon_Bradi1g12196.3 Bradi1g12196.3 PAC:32794977 |
Low | Yes | 1512 | Get ORF Coding potential... Type: noncoding Potential: -1.348 Folding energies... MFEI: -33.272 AMFE: -0.694 GC content %: 47.950 | |
| Bdistachyon_Bradi1g12196.4 Bradi1g12196.4 PAC:32794975 |
High | No | 1355 | Get ORF Coding potential... Type: noncoding Potential: -1.340 Folding energies... MFEI: -33.370 AMFE: -0.684 GC content %: 48.782 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
