GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g12210 Bradi1g12210	Bd1	9108637	9112040	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g12210.2 Bradi1g12210.2 PAC:32806606	High	No	761		Get ORF Coding potential... Type: noncoding Potential: -0.438 Folding energies... MFEI: -31.800 AMFE: -0.583 GC content %: 54.534
Bdistachyon_Bradi1g12210.3 Bradi1g12210.3 PAC:32806605	High	No	765		Get ORF Coding potential... Type: noncoding Potential: -0.439 Folding energies... MFEI: -31.556 AMFE: -0.580 GC content %: 54.379

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).