Gene
Bdistachyon Bradi1g14486
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi1g14486 Bradi1g14486 |
Bd1 | 11419180 | 11423196 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi1g14486.2 Bradi1g14486.2 PAC:32791977 |
High | No | 2004 | Get ORF Coding potential... Type: noncoding Potential: -1.343 Folding energies... MFEI: -27.670 AMFE: -0.640 GC content %: 43.263 | |
| Bdistachyon_Bradi1g14486.3 Bradi1g14486.3 PAC:32791978 |
High | No | 1902 | Get ORF Coding potential... Type: noncoding Potential: -1.337 Folding energies... MFEI: -27.923 AMFE: -0.643 GC content %: 43.428 | |
| Bdistachyon_Bradi1g14486.4 Bradi1g14486.4 PAC:32791979 |
High | No | 1947 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -26.502 AMFE: -0.638 GC content %: 41.551 | |
| Bdistachyon_Bradi1g14486.5 Bradi1g14486.5 PAC:32791980 |
High | No | 661 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -29.561 AMFE: -0.560 GC content %: 52.799 | |
| Bdistachyon_Bradi1g14486.6 Bradi1g14486.6 PAC:32791981 |
High | No | 668 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -28.308 AMFE: -0.528 GC content %: 53.593 | |
| Bdistachyon_Bradi1g14486.7 Bradi1g14486.7 PAC:32791982 |
High | No | 597 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -27.688 AMFE: -0.502 GC content %: 55.109 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
