GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g21600 Bradi1g21600	Bd1	17410552	17417447	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g21600.2 Bradi1g21600.2 PAC:32803586	High	No	969		Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -32.766 AMFE: -0.630 GC content %: 52.012
Bdistachyon_Bradi1g21600.3 Bradi1g21600.3 PAC:32803587	High	No	589		Get ORF Coding potential... Type: noncoding Potential: -0.511 Folding energies... MFEI: -37.054 AMFE: -0.611 GC content %: 60.611

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).