GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g24640 Bradi1g24640	Bd1	19931139	19933857	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g24640.1 Bradi1g24640.1 PAC:32800048	High	No	2411		Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -32.762 AMFE: -0.645 GC content %: 50.809
Bdistachyon_Bradi1g24640.2 Bradi1g24640.2 PAC:32800049	High	No	950		Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -35.853 AMFE: -0.611 GC content %: 58.632

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).