GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g24775 Bradi1g24775	Bd1	20042868	20044247	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g24775.1 Bradi1g24775.1 PAC:32795854	High	No	1280		Get ORF Coding potential... Type: noncoding Potential: -0.699 Folding energies... MFEI: -28.906 AMFE: -0.662 GC content %: 43.672
Bdistachyon_Bradi1g24775.2 Bradi1g24775.2 PAC:32795855	High	No	1174		Get ORF Coding potential... Type: noncoding Potential: -0.713 Folding energies... MFEI: -28.620 AMFE: -0.652 GC content %: 43.867
Bdistachyon_Bradi1g24775.3 Bradi1g24775.3 PAC:32795856	High	No	1132		Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -28.489 AMFE: -0.646 GC content %: 44.081

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).