Gene
Bdistachyon Bradi1g27481
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi1g27481 Bradi1g27481 |
Bd1 | 22660388 | 22661910 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi1g27481.1 Bradi1g27481.1 PAC:32804077 |
High | No | 668 | Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -33.593 AMFE: -0.610 GC content %: 55.090 | |
| Bdistachyon_Bradi1g27481.10 Bradi1g27481.10 PAC:32804086 |
High | No | 808 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -33.453 AMFE: -0.606 GC content %: 55.198 | |
| Bdistachyon_Bradi1g27481.11 Bradi1g27481.11 PAC:32804087 |
High | No | 731 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -33.981 AMFE: -0.606 GC content %: 56.088 | |
| Bdistachyon_Bradi1g27481.2 Bradi1g27481.2 PAC:32804078 |
High | No | 586 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -35.102 AMFE: -0.623 GC content %: 56.314 | |
| Bdistachyon_Bradi1g27481.3 Bradi1g27481.3 PAC:32804079 |
High | No | 744 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -33.441 AMFE: -0.617 GC content %: 54.167 | |
| Bdistachyon_Bradi1g27481.4 Bradi1g27481.4 PAC:32804080 |
High | No | 611 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -35.597 AMFE: -0.629 GC content %: 56.628 | |
| Bdistachyon_Bradi1g27481.5 Bradi1g27481.5 PAC:32804081 |
High | No | 687 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -34.731 AMFE: -0.626 GC content %: 55.459 | |
| Bdistachyon_Bradi1g27481.6 Bradi1g27481.6 PAC:32804082 |
High | No | 759 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -34.954 AMFE: -0.642 GC content %: 54.414 | |
| Bdistachyon_Bradi1g27481.7 Bradi1g27481.7 PAC:32804083 |
High | No | 752 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -34.069 AMFE: -0.633 GC content %: 53.856 | |
| Bdistachyon_Bradi1g27481.8 Bradi1g27481.8 PAC:32804084 |
High | No | 863 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -32.387 AMFE: -0.599 GC content %: 54.114 | |
| Bdistachyon_Bradi1g27481.9 Bradi1g27481.9 PAC:32804085 |
High | No | 787 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -32.541 AMFE: -0.593 GC content %: 54.892 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
