GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g28205 Bradi1g28205	Bd1	23397848	23399903	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g28205.1 Bradi1g28205.1 PAC:32792088	High	No	964		Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -29.118 AMFE: -0.559 GC content %: 52.075
Bdistachyon_Bradi1g28205.2 Bradi1g28205.2 PAC:32792090	High	No	788		Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -29.175 AMFE: -0.559 GC content %: 52.157
Bdistachyon_Bradi1g28205.4 Bradi1g28205.4 PAC:32792089	High	No	889		Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -29.651 AMFE: -0.562 GC content %: 52.756

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).