GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g32463 Bradi1g32463	Bd1	27895228	27899607	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g32463.1 Bradi1g32463.1 PAC:32793094	Low	Yes	1259		Get ORF Coding potential... Type: noncoding Potential: -1.412 Folding energies... MFEI: -38.737 AMFE: -0.690 GC content %: 56.156
Bdistachyon_Bradi1g32463.2 Bradi1g32463.2 PAC:32793095	Low	Yes	1130		Get ORF Coding potential... Type: noncoding Potential: -1.397 Folding energies... MFEI: -40.080 AMFE: -0.697 GC content %: 57.522

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).