Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi1g35612 Bradi1g35612 |
Bd1 | 31294989 | 31297459 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi1g35612.1 Bradi1g35612.1 PAC:32795546 |
Low | Yes | 916 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -27.227 AMFE: -0.742 GC content %: 36.681 | |
Bdistachyon_Bradi1g35612.2 Bradi1g35612.2 PAC:32795547 |
Low | Yes | 954 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -27.568 AMFE: -0.747 GC content %: 36.897 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi1g35612.1 | Rfam | 11.0 | MIR1122 | 2.7e-11 |
Bdistachyon_Bradi1g35612.2 | Rfam | 11.0 | MIR1122 | 2.8e-11 |