GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g40435 Bradi1g40435	Bd1	37212207	37218083	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g40435.1 Bradi1g40435.1 PAC:32806166	High	No	830		Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -27.964 AMFE: -0.565 GC content %: 49.518
Bdistachyon_Bradi1g40435.2 Bradi1g40435.2 PAC:32806165	High	No	834		Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -28.094 AMFE: -0.567 GC content %: 49.520

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).