Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi1g41691 Bradi1g41691 |
Bd1 | 38337684 | 38339646 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi1g41691.1 Bradi1g41691.1 PAC:32799711 |
Low | No | 1277 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -28.324 AMFE: -0.549 GC content %: 51.605 | |
Bdistachyon_Bradi1g41691.2 Bradi1g41691.2 PAC:32799712 |
Low | No | 1160 | Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -28.759 AMFE: -0.536 GC content %: 53.621 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi1g41691.2 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-18_BD-LTR | |
Bdistachyon_Bradi1g41691.1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-18_BD-LTR |