GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g45011 Bradi1g45011	Bd1	43318761	43321796	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g45011.1 Bradi1g45011.1 PAC:32802313	High	No	2696		Get ORF Coding potential... Type: noncoding Potential: -1.334 Folding energies... MFEI: -27.177 AMFE: -0.636 GC content %: 42.730
Bdistachyon_Bradi1g45011.2 Bradi1g45011.2 PAC:32802314	High	No	790		Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -26.633 AMFE: -0.489 GC content %: 54.430

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).