GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g49765 Bradi1g49765	Bd1	48583254	48591081	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g49765.1 Bradi1g49765.1 PAC:32799857	High	No	642		Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -29.813 AMFE: -0.665 GC content %: 44.860
Bdistachyon_Bradi1g49765.2 Bradi1g49765.2 PAC:32799858	High	No	513		Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -29.669 AMFE: -0.653 GC content %: 45.419

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).