GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g55811 Bradi1g55811	Bd1	54519802	54520664	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g55811.1 Bradi1g55811.1 PAC:32799622	High	No	713		Get ORF Coding potential... Type: noncoding Potential: -0.684 Folding energies... MFEI: -27.784 AMFE: -0.544 GC content %: 51.052
Bdistachyon_Bradi1g55811.2 Bradi1g55811.2 PAC:32799623	High	No	621		Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -29.404 AMFE: -0.565 GC content %: 52.013

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).