GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g56086 Bradi1g56086	Bd1	54971311	54975895	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g56086.3 Bradi1g56086.3 PAC:32793585	High	No	2223		Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -28.354 AMFE: -0.658 GC content %: 43.095
Bdistachyon_Bradi1g56086.6 Bradi1g56086.6 PAC:32793584	High	No	3266		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -28.491 AMFE: -0.682 GC content %: 41.794
Bdistachyon_Bradi1g56086.7 Bradi1g56086.7 PAC:32793586	High	No	2219		Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -28.405 AMFE: -0.659 GC content %: 43.082
Bdistachyon_Bradi1g56086.8 Bradi1g56086.8 PAC:32793587	High	No	3491		Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -28.009 AMFE: -0.679 GC content %: 41.220

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).