Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi1g58603 Bradi1g58603 |
Bd1 | 57719271 | 57722938 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi1g58603.1 Bradi1g58603.1 PAC:32801112 |
Low | No | 1151 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -30.321 AMFE: -0.691 GC content %: 43.875 | |
Bdistachyon_Bradi1g58603.2 Bradi1g58603.2 PAC:32801111 |
Low | No | 1873 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -28.468 AMFE: -0.701 GC content %: 40.630 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi1g58603.1 | RepBase (RepeatMasker) | 2014-01-31 | Vandal9 | |
Bdistachyon_Bradi1g58603.2 | RepBase (RepeatMasker) | 2014-01-31 | Vandal9 |