Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi1g59995 Bradi1g59995 |
Bd1 | 59352557 | 59353841 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi1g59995.1 Bradi1g59995.1 PAC:32805748 |
Low | Yes | 1285 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -26.584 AMFE: -0.700 GC content %: 37.977 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi1g59995.1 | Rfam | 11.0 | MIR1122 | 6.2e-16 |
Bdistachyon_Bradi1g59995.1 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA |