GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi1g60135 Bradi1g60135	Bd1	59568190	59570388	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi1g60135.1 Bradi1g60135.1 PAC:32799272	High	No	1806		Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -25.161 AMFE: -0.612 GC content %: 41.141
Bdistachyon_Bradi1g60135.2 Bradi1g60135.2 PAC:32799273	High	No	989		Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -27.482 AMFE: -0.583 GC content %: 47.118
Bdistachyon_Bradi1g60135.3 Bradi1g60135.3 PAC:32799274	High	No	957		Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -26.834 AMFE: -0.580 GC content %: 46.290
Bdistachyon_Bradi1g60135.4 Bradi1g60135.4 PAC:32799275	High	No	704		Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -26.634 AMFE: -0.525 GC content %: 50.710

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).