Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi1g65377 Bradi1g65377 |
Bd1 | 64617410 | 64623656 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi1g65377.17 Bradi1g65377.17 PAC:32802401 |
Low | No | 1090 | Get ORF Coding potential... Type: noncoding Potential: -0.467 Folding energies... MFEI: -26.963 AMFE: -0.561 GC content %: 48.073 | |
Bdistachyon_Bradi1g65377.2 Bradi1g65377.2 PAC:32802400 |
Low | No | 1128 | Get ORF Coding potential... Type: noncoding Potential: -0.482 Folding energies... MFEI: -25.018 AMFE: -0.615 GC content %: 40.691 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi1g65377.17 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA | |
Bdistachyon_Bradi1g65377.2 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA |