Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi1g68208 Bradi1g68208 |
Bd1 | 66960398 | 66962163 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi1g68208.1 Bradi1g68208.1 PAC:32801929 |
Low | No | 945 | Get ORF Coding potential... Type: noncoding Potential: -0.506 Folding energies... MFEI: -25.587 AMFE: -0.666 GC content %: 38.413 | |
Bdistachyon_Bradi1g68208.2 Bradi1g68208.2 PAC:32801930 |
Low | No | 926 | Get ORF Coding potential... Type: noncoding Potential: -0.613 Folding energies... MFEI: -26.469 AMFE: -0.668 GC content %: 39.633 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi1g68208.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-23_SBi | |
Bdistachyon_Bradi1g68208.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-23_SBi |