GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g00772 Bradi2g00772	Bd2	458712	461229	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g00772.1 Bradi2g00772.1 PAC:32773053	High	No	528		Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -26.326 AMFE: -0.539 GC content %: 48.864
Bdistachyon_Bradi2g00772.2 Bradi2g00772.2 PAC:32773052	High	No	567		Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -25.873 AMFE: -0.532 GC content %: 48.677
Bdistachyon_Bradi2g00772.3 Bradi2g00772.3 PAC:32773054	High	No	561		Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -26.578 AMFE: -0.567 GC content %: 46.881

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).